- A -

abundance

SHE analysis
Across sample rarefaction
Sample interpolation
Rank Abundance
K dominance
Geometric
Log series
Truncated log-normal
Broken stick

Abundance

accumulation

Abundance
Species Accumulation Curves

ACE

add

Add species
Add sample

adjustment

Pooled rarefaction
Across sample rarefaction

alpha

Alpha diversity
Simpson's Index
Margalef D
Berger-Parker Dominance
McIntosh D
Brillouin D
Fisher's alpha
Q statistic
Menhinick Index
Jackknifing diversity
How jackknifing works

altering

ASPT

authors

- B -

Berger

best choice index

beta

beta indices

bibliography

bitmap

BMWP

Special indices
BMWP score
Habitat specific BMWP
Revised BMWP
Original BMWP

bootstrap

bootstrap confidence intervals

brillouin

Alpha diversity
Brillouin D
Brillouin E

Bristol channel

broken stick

Fitting abundance distributions
Broken stick

butterfly

- C -

Carmargo

CD

change

chao

citation

cite

close

collection

columns

compare

comparing

Comparing the index of two samples
Comparing samples
Diversity ordering
Renyi family
Right-tailed Sum Diversity Ordering

comparison

Renyi family
Across sample rarefaction

comparison of richness

Single sample rarefaction
Sample interpolation

comparisons

complement

complete

confidence

contact

contact pisces

copy

Cotgreave

coverage

Chao & Lee 1
Chao & Lee 2

create data file

cross

cumulative

curve

- D -

data

Entering data
Creating a new data set within SDR
Non-Integer Data

data file

data sets

data type

dataset

demo

Tutorials and demonstration data sets
Entering data

demonstartions

Demonstration

Essential steps for the analysis of diversity
Diversity Ordering tutorial
Species accumulation tutorial
Rank abundance plots
Comparing the index of two samples

demonstration data

deselect

Dispersion

distribution

Geometric
Log series
Truncated log-normal
Broken stick

distributions

diversity

Shannon-Wiener Index
McIntosh D
Menhinick Index
Strong's Index
Jackknifing diversity
How jackknifing works
Diversity ordering
Beta diversity indices

diversity ordering

Diversity Ordering tutorial
Renyi family
Right-tailed Sum Diversity Ordering

dominance

Berger-Parker Dominance
Strong's Index
Abundance

dummy data

- E -

edit

Add species
Add sample

editing

effort

Pooled rarefaction
Across sample rarefaction

effort adjustment

Single sample rarefaction
Sample interpolation

End

equitability

Pielou J (All samples)
Pielou J (Each Sample)
McIntosh E
Brillouin E
SHE analysis

equitability J

Pielou J (All samples)
Pielou J (Each Sample)

estimator

Chao Quantitative
Chao Presence/absence
Chao & Lee 1
Chao & Lee 2
1st Order Jackknife
2nd Order jackknife
Bootstrap
Beta diversity

evenness

Evenness
Smith and Wilson's view
Pielou J (All samples)
Pielou J (Each Sample)
McIntosh E
Brillouin E
Heip
Simpson's E
NHC
Camargo
Smith & Wilson B
Smith & Wilson 1-D
Smith & Wilson -lnD
Shannon maximum
Shannon minimum
Gini

Excel

Entering data
Creating a data file using a spread sheet

export

Printing and exporting your results
Saving a data set

- F -

file

Open an existing data file
Saving a data set

file menu

Fisher

Alpha diversity
Log series

fit

SHE analysis
Broken stick

fitting

Fitting abundance distributions
Log series

freshwater

BMWP score
Habitat specific BMWP
Revised BMWP
Original BMWP
ASPT index
Irish water quality rating
LIFE scores

- G -

general

General statistics

geometric

getting data

Gini

graphs

grid

- H -

Harvey

Heip

help

heterogeneity

hinkley

how to

Installation
Using Species Diversity & Richness

- I -

ICE

Incidence

increase in species with effort

index

Shannon-Wiener Index
Simpson's Index
Margalef D
Berger-Parker Dominance
McIntosh D
Brillouin D
Fisher's alpha
Q statistic
Menhinick Index
Strong's Index
Jackknifing diversity
How jackknifing works
McIntosh E
Brillouin E
Heip
Simpson's E
NHC
Camargo
Smith & Wilson B
Smith & Wilson 1-D
Smith & Wilson -lnD
Shannon maximum
Shannon minimum
Gini
Beta diversity indices
BMWP score
Habitat specific BMWP
Revised BMWP
Original BMWP
ASPT index

individuals

information

Shannon-Wiener Index
SHE analysis

Input

install

instructions

integer

interpolation

intervals

introduction

Irish

- J -

Jackknife

Jackknifing

Jackknifing diversity
How jackknifing works

- K -

kurtosis

- L -

Lee

LIFE

log

Log series
Truncated log-normal

log normal

log series

lotus

- M -

maximum

Summary Statistics
Maximum size of the data set
Maximum size of a variable
Shannon maximum
Michaelis-Menten

mcintosh

Alpha diversity
McIntosh E

mean

median

metafile

Michaelis Menten

michaelis-menten

minimum

Summary Statistics
Shannon minimum

- N -

Nee

new

NHC

non-integer

non-random

normal

normality

number

Alpha diversity
Species Number
Chao Quantitative
Chao Presence/absence
Chao & Lee 1
Chao & Lee 2
1st Order Jackknife
2nd Order jackknife
Bootstrap
Abundance
Species Number
Beta diversity

number of samples

- O -

observation size

opening

operating system

order

ordering

output

- P -

papers

parametric models

Parker

paste

pisces conservation

print

printing

- Q -

Q

Alpha diversity
Q statistic

- R -

RAM

random

randomisation test

randomise

randomize

range

rank

Rank abundance plots
Abundance
Rank Abundance
K dominance

rank abundance

Tutorials and demonstration data sets
Gini

rarefaction

Species richness estimators
Pooled rarefaction
Single sample rarefaction
Across sample rarefaction
Sample interpolation

rarefraction

Pooled rarefaction
Single sample rarefaction
Across sample rarefaction

rate of migration

real

reference

references

refs

regression

relative

relative abundance

renyi

Diversity Ordering tutorial
Diversity ordering
Renyi family

Requirements

Richness

SHE analysis
Species richness estimators
Chao Quantitative
Chao Presence/absence
Chao & Lee 1
Chao & Lee 2
1st Order Jackknife
2nd Order jackknife
Bootstrap
Michaelis-Menten
Beta diversity

right-tailed

rows

runs

- S -

sample heterogeneity

sample number

Sample statistics

samples

save

score

BMWP score
Habitat specific BMWP
Revised BMWP
Original BMWP
ASPT index
Irish water quality rating

select

selection

Shannon

Alpha diversity
Shannon-Wiener Index
Pielou J (All samples)
Pielou J (Each Sample)
Heip
Shannon maximum
Shannon minimum
SHE analysis

SHE

sheet

Significance

Simpson

Alpha diversity
Simpson's Index
Simpson's E
Smith & Wilson 1-D
Smith & Wilson -lnD

simulate

simulated data

simulation

size

skew

Slope

Smith and Wilson

Smith & Wilson B
Smith & Wilson 1-D
Smith & Wilson -lnD

smooth

Solow

sort

special

species

Maximum size of the data set
Species Number
Species Number

species accumulation

Tutorials and demonstration data sets
Species accumulation tutorial
Strong's Index

species distribution

species effort curves

species in common

species not in common

species number

Michaelis-Menten
Species Number

Species statistics

spread

spreadsheet

starting

Creating a new data set within SDR
Open an existing data file

statistical

stats

stopping rule

storage

support

- T -

tech support

test data

Testing for differences

tick

tourist species

transect

tropical

turnover

tutorial

Tutorials and demonstration data sets
Essential steps for the analysis of diversity
Diversity Ordering tutorial
Species accumulation tutorial
Rank abundance plots
Comparing the index of two samples

type

- V -

variance

versions

- W -

Weaver

whats new

Wiener

Shannon-Wiener Index
Pielou J (All samples)
Pielou J (Each Sample)