- 2 -

26 Similarity and distance measures

- A -

adjust

adjustments

Agglomerative clustering

allocate

allocating

Analysis of Similarity

ANOSIM

arcsine

aspect

assigning

assistance

Association analysis

authors

average

- B -

base10

Bibliography

binary

Dummy Environmental variables
Binary Environments

binary variables

Biological variables

Biplot

Rank Plot
Biplot Scores

bitmap

by mean

- C -

canonical

Canonical Correspondence Analysis
What is CCA?

Canonical coefficients

Canonical Correspondence Analysis

Canonical Correspondence Analysis
What is CCA?
ECOM

categorical variables

CCA

What is CCA?
ECOM

chart

chart export

chart format

charts

Exporting charts
Preparing charts for output
Zooming and panning on graphs

choice

circular

Circular Statistics

coefficients

colinearity

Co-linearity

collinearity

Collinearity

column statistics

columns

Dealing with zeros
Transposing data

common

compass

constant

Contact

contacting

copy

copying

correlation

Correlation of Env. Vars
Environment plot

correspondence

Sample Correspondence Check
Canonical Correspondence Analysis
What is CCA?

counting zeros

- D -

data

Demonstration data sets
Creating and editing a data set
Preparing large data sets in a spreadsheet program
Data entry from within ECOM
Editing existing data
Saving edited data or creating a new data file
Maximum size of the data set and computation speed
Sample Correspondence Check
Working Samples/Species Data

Data checks

data relativisations

data summary

decimal places

DECORANA

delete

Dealing with zeros
Sample Correspondence Check

demos

Density from Distance

Depth

Detrended Correspondence Analysis

discriminant analysis

display options

Divisive cluster analysis

dummy

dummy variables

Linear combinations of environmental variables
Dummy Environmental variables

Dynamica

- E -

Ecom

Edit chart

editing

Eigenvalues

enhanced metafile

environment

environmental

Environmental

Environmental data

Environmental varaiables

Environmental variables

Environmental variables from biological features
Selecting Environmental variables
Correlation of Env. Vars
Binary Environments

Errors

Excel

Explanatory variables

exporting

- F -

File

File Menu

Fuzzy Grouping

- G -

getting started

General instructions
Quick quide to running a data set
Installation

Graph

graph export

Graphical output

graphics

Scatter Plot
Exporting charts
Printing charts
Preparing charts for output
Graph display options
Zooming and panning on graphs

graphs

Exporting charts
Printing charts
Preparing charts for output
Zooming and panning on graphs

Graphs

Methods offered by ECOM
Scatter Plot
Graph display options

grouping

groups

- H -

Hedgerow Assistant

help

Obtaining help
Contacting PISCES for help

Hinkley

- I -

image format

Improvements

input

General instructions
Opening a data set
Creating and editing a data set
Preparing large data sets in a spreadsheet program
Data entry from within ECOM
Maximum size of the data set and computation speed

install

installation

instructions

Installation
Opening a data set

Introduction

- J -

Jolly-Seber

jpeg

- K -

K means

kurtosis

Statistics radio buttons
Data set statistics

- L -

labels

large array

Large data sets

large files

large matrix

linear

linear regression

loading from Excel

log

logarithmic transformation

logs

- M -

main form

maximum

Maximum size of the data set and computation speed
Data set statistics

maximum value

mean

Data relativisations
Statistics radio buttons
Data set statistics

median

Statistics radio buttons
Data set statistics

Memory

menu

menus

metafile

methods

Methods offered by ECOM
Canonical Correspondence Analysis

Microsoft Excel

minimum

Monte Carlo

Move

MR

MS Excel

Multiple regression

Multiple Regression

- N -

natural

NMDS

Non-metric Multidimensional Scaling

- O -

operating system

options

User preferences
Preparing charts for output

Ordination

Other programs

output

The output screens
Species Scores
Variance & Eigenvalues
Sample Scores
Rank Plot
Biplot Scores
Canonical Coef.
Scatter Plot
Printing and saving results
Printing charts

Output screens

- P -

panning

PCA

Pearson

physical

physical data

physical variables

Correlation of Env. Vars
Environment plot

Pisces

plot

Ordination Plot
Environment plot
Scatter Plot

plots

plottng

power

predictors

Selecting Environmental variables
Binary Environments

preferences

Principal Components Analysis

print

Printing charts
Graph display options
Printing text and grid output

printing

General instructions
Printing and saving results
Printing charts
Printing text and grid output

printing grids

printing output

problems

- Q -

quick guide

- R -

Randomisation

Randomization

Rank

Rank Plot
Biplot Scores

RDA

Reciprocal Averaging

Redundancy Analysis

References

Regression

Relative

Removal Sampling

removing zeros

results

The output screens
Species Scores
Sample Scores
Ordination Plot
Rank Plot
Biplot Scores
Canonical Coef.

Rotate

row statistics

rows

Dealing with zeros
Transposing data

- S -

sample number

samples

save

saving

Saving edited data or creating a new data file
Printing and saving results

saving grids

saving output

scores

Sample Scores
Rank Plot
Biplot Scores

SDR

selection

sets

Setup

Similarity Percentages

SIMPER

Simply Growth

Simply Probit

Simply Tagging

singular

size

skewness

Statistics radio buttons
Data set statistics

software

species

Species Diversity & Richness

Species Filtering

species number

speed

square root

standard deviation

statistics

Summary of data
Statistics radio buttons

step by step

Stepwise Regression (SR)

Student t

summary

Summary of data
Data set statistics

sums of squares

system requirements

- T -

t value

TeeReader

tests

transformation

transformations

transposing

truncate

TWINSPAN

Two-way INdicator Species Analysis

- U -

user preferences

- V -

variance

Statistics radio buttons
Data set statistics
Variance & Eigenvalues

vectors

- W -

what's new

working

working data

- Y -

year

- Z -

zero

Dealing with zeros
Data set statistics

zoom

Zoom