To undertake the various analyses you will also need to have a number of packages installed.
For example the vegan package.
CAP will do this for you. Once R is installed, selecting Check R Install will produce the following screen. Just click on the Run above R Code button and the required R code listing to install the packages will be run for you.
Remember, you can go online and get help for all R packages.
If the packages are already installed on your computer, CAP will use these, otherwise it will install the packages.
